| Pokémon X and Y | 2325 | |
| Animal Crossing: New Leaf | 637 | |
| Mario Kart 7 | 66 | |
| The Legend of Zelda: Ocarina of Time | 62 | |
| Bravely Default | 48 | |
| Super Mario 3D Land | 45 | |
| Fire Emblem: Awakening | 42 | |
| Kid Icarus: Uprising | 37 | |
| Super Street Fighter IV | 35 | |
| Super Smash Bros. for Nintendo 3DS | 33 | |
| Harvest Moon 3D: A New Beginning | 31 | |
| Pokémon Omega Ruby and Alpha Sapphire | 27 | |
| Pokémon Y | 27 | |
| Luigi's Mansion 2 | 26 | |
| New Super Mario Bros. 2 | 25 | |
| The Legend of Zelda: A Link Between Worlds | 23 | |
| Resident Evil: Revelations | 19 | |
| Paper Mario: Sticker Star | 17 | |
| Star Fox 64 3D | 17 | |
| Pokémon Mystery Dungeon: Gates to Infinity | 17 | |
| Pokédex 3D | 16 | |
| Kingdom Hearts 3D: Dream Drop Distance | 15 | |
| Professor Layton and the Miracle Mask | 15 | |
| Tomodachi Life | 15 | |
| Nintendogs + Cats: Golden Retriever & Friends | 14 | |
| Resident Evil: The Mercenaries 3D | 14 | |
| Monster Hunter 3 Ultimate | 14 | |
| Dead or Alive Dimensions | 13 | |
| Tales of the Abyss | 13 | |
| Excitebike | 12 | |
| Heroes of Ruin | 11 | |
| Pilotwings Resort | 10 | |
| Tetris | 10 | |
| Kid Icarus | 10 | |
| Mario Tennis Open | 10 | |
| Pokémon Bank | 10 | |
| The Legend of Zelda: Majora's Mask | 10 | |
| Ridge Racer 3D | 9 | |
| Harvest Moon 3D: The Tale of Two Towns | 9 | |
| Theatrhythm Final Fantasy | 9 | |
| Pullblox | 9 | |
| Face Raiders | 8 | |
| Metal Gear Solid: Snake Eater 3D | 8 | |
| Rayman | 8 | |
| Fantasy Life | 8 | |
| Pokémon Dream Radar | 7 | |
| Mario & Luigi: Dream Team Bros. | 7 | |
| Super Pokémon Rumble | 7 | |
| Tom Clancy's Ghost Recon: Shadow Wars | 7 | |
| Mii Plaza: StreetPass Quest | 7 | |