| Pokémon X and Y | 21 | |
| Animal Crossing: New Leaf | 19 | |
| The Legend of Zelda: Ocarina of Time | 17 | |
| Super Smash Bros. for Nintendo 3DS | 13 | |
| Luigi's Mansion 2 | 12 | |
| Fire Emblem: Awakening | 11 | |
| Bravely Default | 11 | |
| Kid Icarus: Uprising | 10 | |
| Mario Kart 7 | 9 | |
| Mario & Luigi: Dream Team Bros. | 7 | |
| Resident Evil: Revelations | 7 | |
| Super Mario 3D Land | 7 | |
| Super Street Fighter IV | 6 | |
| Phoenix Wright: Ace Attorney - Dual Destinies | 6 | |
| The Legend of Zelda: A Link Between Worlds | 6 | |
| Nintendogs + Cats: Golden Retriever & Friends | 5 | |
| Star Fox 64 3D | 5 | |
| Professor Layton vs Phoenix Wright: Ace Attorney | 5 | |
| Inazuma Eleven Go: Light / Shadow | 5 | |
| Fantasy Life | 5 | |
| Pokémon Omega Ruby and Alpha Sapphire | 5 | |
| Paper Mario: Sticker Star | 4 | |
| Tales of the Abyss | 4 | |
| Time Travelers | 4 | |
| Sonic Generations | 4 | |
| Project X Zone | 4 | |
| Bravely Second: End Layer | 4 | |
| Monster Hunter 4 | 3 | |
| Shin Megami Tensei IV | 3 | |
| Cardfight!! Vanguard: Ride to Victory | 3 | |
| NightSky | 3 | |
| Shantae and the Pirate's Curse | 3 | |
| Ridge Racer 3D | 3 | |
| Metal Gear Solid: Snake Eater 3D | 3 | |
| Dead or Alive Dimensions | 3 | |
| Professor Layton and the Miracle Mask | 3 | |
| Theatrhythm Final Fantasy | 3 | |
| Beyond the Labyrinth | 3 | |
| Harvest Moon 3D: A New Beginning | 3 | |
| New Super Mario Bros. 2 | 3 | |
| Rune Factory 4 | 3 | |
| Shin Megami Tensei: Devil Summoner - Soul Hackers | 3 | |
| Dragon Quest VII: Fragments of the Forgotten Past | 3 | |
| Professor Layton and the Azran Legacy | 3 | |
| Fire Emblem Fates: Conquest | 3 | |
| Nano Assault EX | 2 | |
| Super Pokémon Rumble | 2 | |
| Pilotwings Resort | 2 | |
| Kingdom Hearts 3D: Dream Drop Distance | 2 | |
| Super Monkey Ball 3D | 2 | |