Various retailers across the US have stopped shipping Metroid Prime Trilogy, with Nintendo no longer shipping the game.
When Nintendo said "Limited Edition" it looks as if it truly did mean limited, with the game available on Amazon only through third party vendors/the used market.
Coffee with Games emailed Nintendo's customer service, confirming that Metroid Prime Trilogy will no longer be produced.
Thanks for your e-mail. The earlier response regarding Metroid Prime Trilogy was correct: it is no longer being shipped. When first introduced, it was announced that there would be limited availability. However, a reason for this was not announced. That being said, you may still be able to locate a copy via stores that specialize in previously played or used games.
In related shipping-fun, it seems Nintendo are still producing New Play Control games - the likes of Donkey Konga and Pikmin. Nintendo may likely now release the Prime games separately, as they are in Japan. No plans have been confirmed yet however.
Have or will you be purchasing Metroid Prime Trilogy? Do you think it should have been a regular release instead of a limited edition title?