I really don't mind Nintendo "milking" SM64 because I've never played, touched or even seen an N64 in real life. (Never was a Nintendo fan until I came across a Gamecube kiosk with Super Mario Sunshine in Toys'R'Us while shopping for my niece.)
SM64 was new for me on the DS, apart from some emulator experiments that didn't sell me on it and made me think it played like a lousy PC shareware game. Being able to play it with better controls on the VC might be a load of old tosh for you guys, but it's a breath of fresh air for me.
Can't say the same for OoT because I played it on the Gamecube. But I still might buy it again on the VC someday because I never actually finished it. And I never even started Majora's Mask. So as far as I'm concerned, bring it on.